HIRSCHHORN LAB
Boston Children's Hospital · Broad Institute of MIT and Harvard · Harvard Medical School
OUR TOOLS
DEPICT: Gene set enrichment analysis, gene prioritization, and tissue prioritization for GWAS
Reference: PDF
Link: https://data.broadinstitute.org/mpg/depict/
SNPsnap: A Web-based tool for identification and annotation of matched SNPs
Reference: PDF
Link: https://data.broadinstitute.org/mpg/snpsnap/about.html
PAIRUP-MS: Pathway analysis and imputation to relate unknowns in profiles from mass spectrometry-based metabolite data
Reference: PDF
Link: https://github.com/yuhanhsu/PAIRUP-MS
Benchmarker: An unbiased, association-data-driven strategy to evaluate gene prioritization algorithms
Reference: PDF
Link: https://github.com/RebeccaFine/benchmarker
TRAPD: User-friendly software package for performing gene-based burden testing against public databases
Reference: PDF
Link: https://github.com/mhguo1/TRAPD
OTHER USEFUL LINKS
GIANT Consortium wiki: https://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium
Medical and Population Genetics at Broad: https://www.broadinstitute.org/medical-population-genetics
Tagger: Selection and evaluation of tag SNPs: http://www.broadinstitute.org/mpg/tagger/
GoldenPath: http://genome.ucsc.edu/
1000 Genomes: http://www.1000genomes.org/
HapMap: http://www.hapmap.org/
MPG Tools: http://www.broadinstitute.org/tools/software.html