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DEPICT: Gene set enrichment analysis, gene prioritization, and tissue prioritization for GWAS

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Reference: PDF

Link: https://data.broadinstitute.org/mpg/depict/

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SNPsnap: A Web-based tool for identification and annotation of matched SNPs

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Reference: PDF

Link: https://data.broadinstitute.org/mpg/snpsnap/about.html

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PAIRUP-MS: Pathway analysis and imputation to relate unknowns in profiles from mass spectrometry-based metabolite data

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Reference: PDF

Link: https://github.com/yuhanhsu/PAIRUP-MS

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Benchmarker: An unbiased, association-data-driven strategy to evaluate gene prioritization algorithms 

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Reference: PDF

Link: https://github.com/RebeccaFine/benchmarker

 

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TRAPD: User-friendly software package for performing gene-based burden testing against public databases

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Reference: PDF

Link: https://github.com/mhguo1/TRAPD

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